An Analysis Pipeline and its Application on the Cucurbita pepo Genome: An Automated Analysis Pipeline for Next Generation Sequencing Data - Couverture souple

Schobesberger, Richard

Couverture souple

ISBN 10 : 3639392221 ISBN 13 : 9783639392227

Editeur : AV Akademikerverlag, 2012

Synopsis

First insights into the genome of Cucurbita pepo are presented in this thesis. 15.67 percent of the 2,349,855 sequence reads generated with Roche’s 454 Pryosequencer received a classification in preprocessing. Of the remaining sequence reads 38.82% were classified as repeats, 11.08 percent as gene coding region, 7.08 percent as chloroplast and 5.39 percent as mitochondrial sequences. A comparison with the genome of cucumber reinforces this distribution. Moreover, this thesis describes an automated analysis pipeline for genome analyses. It is equipped with a set of newly developed components to perform whole genome analyses with next generation sequencing datasets, to store the obtained results into a database and to visualize them on a web interface. Comparisons with state of the art analysis pipelines show that its visualization capabilities and automatic input checker are rare but very helpful features.

Détails de l'édition

• Éditeur: AV Akademikerverlag
• Date d'édition: 2012
• Langue: anglais
• ISBN 10: 3639392221
• ISBN 13: 9783639392227
• Reliure: Broché
• Nombre de pages: 76
• Coordonnées du fabricant: non disponible
• Personne responsable: non disponible