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Development of Phylogenetic Tree based on Kimura’s Method: Based on Un-weighted Pair Group method with Arithmetic Mean (UPGMA) and Neighnor Joining (NJ) Scoring Techniques - Couverture souple

Bhambri, Pankaj; Goyal, Franky

 
9783659336539: Development of Phylogenetic Tree based on Kimura’s Method: Based on Un-weighted Pair Group method with Arithmetic Mean (UPGMA) and Neighnor Joining (NJ) Scoring Techniques
Couverture souple
ISBN 10 : 365933653X ISBN 13 : 9783659336539
Editeur : LAP LAMBERT Academic Publishing, 2013

Synopsis

The research in bioinformatcs has accumulated large amount of data. It is the study of Bio-molecules information. Bioinformatics offers different knowledge discovery concepts for molecular biology and has many practical applications. DNA sequence alignment is one of the applications of the bioinformatics. Multiple sequence alignment is used to align the biological sequences along a column. As the process generates distances of multiple alignments among the pairs of different species, phylogenetic tree is being formulated. Multiple sequence alignment arranges the sequences in such a way that evolutionarily equivalent positions accross all sequences are matched. Alignement of substitutions made into two categories: Jukes Cantor Method and Kimura's Method. Jukes Cantor Method and Kimura's Method are used in the present work for constructing phylogenetic tree. These trees are based on the two scoring techniques: UPGMA (Un-weighted Pair Group method with Arithmatic Mean) and NJ (Neigbor Joining). Advanced Kimura's method is proposed which supercedes the traditional methods. Web based FASTA sequences are considered as input and the results are compared for all the three models.

Les informations fournies dans la section « Synopsis » peuvent faire référence à une autre édition de ce titre.

Présentation de l'éditeur

The research in bioinformatcs has accumulated large amount of data. It is the study of Bio-molecules information. Bioinformatics offers different knowledge discovery concepts for molecular biology and has many practical applications. DNA sequence alignment is one of the applications of the bioinformatics. Multiple sequence alignment is used to align the biological sequences along a column. As the process generates distances of multiple alignments among the pairs of different species, phylogenetic tree is being formulated. Multiple sequence alignment arranges the sequences in such a way that evolutionarily equivalent positions accross all sequences are matched. Alignement of substitutions made into two categories: Jukes Cantor Method and Kimura's Method. Jukes Cantor Method and Kimura's Method are used in the present work for constructing phylogenetic tree. These trees are based on the two scoring techniques: UPGMA (Un-weighted Pair Group method with Arithmatic Mean) and NJ (Neigbor Joining). Advanced Kimura's method is proposed which supercedes the traditional methods. Web based FASTA sequences are considered as input and the results are compared for all the three models.

Biographie de l'auteur

Er. Pankaj Bhambri is working as Assistant Professor at Guru Nanak Dev Engineering College, Ludhiana. He has more than 09 years of teaching experience. His articals on various latest IT trends have been published in books, journals, conference and seminars. He is the recipient of prestigious "Rashtriya Rattan Award" and "Best Teacher Award".

Les informations fournies dans la section « A propos du livre » peuvent faire référence à une autre édition de ce titre.

Éditeur
LAP LAMBERT Academic Publishing
Date d'édition
2013
Langue
anglais
ISBN 10 
365933653X
ISBN 13 
9783659336539
Reliure
Broché
Nombre de pages
80
Coordonnées du fabricant
non disponible
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