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Integration of large datasets for plant model organisms: A guided tour to knowledge aggregration - Couverture souple

Sucaet, Yves

 
9783659524608: Integration of large datasets for plant model organisms: A guided tour to knowledge aggregration
Couverture souple
ISBN 10 : 3659524603 ISBN 13 : 9783659524608
Editeur : LAP LAMBERT Academic Publishing, 2014

Synopsis

With the advent of Big Data, data integration is very important topic in the heterogeneous bioinformatics landscape. This book starts off with the current state of biological pathway databases in general, and in particular, plant pathway databases. We explore different models to interface with the various stakeholders of biological data repositories. We discuss the potential use of XML as a repository for information integration, downstream processing, and data. Having explored different alternatives, we build up our own comprehensive knowledge repository for plant metabolic networks. A public website (http://www.metnetonline.org) was built to make information available for ad-hoc users. In addition, a dedicated API (MetNetAPI: http://www.metnetonline.org/api) is provided to accommodate bioinformaticians and software developers who wish to build advanced applications on top of the warehouse. Integrated databases are only useful when they can be synchronized with their respective external sources. We’ve created a framework for a systematic approach to integration. This work thus provides a roadmap to current and future biological database projects

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Présentation de l'éditeur

With the advent of Big Data, data integration is very important topic in the heterogeneous bioinformatics landscape. This book starts off with the current state of biological pathway databases in general, and in particular, plant pathway databases. We explore different models to interface with the various stakeholders of biological data repositories. We discuss the potential use of XML as a repository for information integration, downstream processing, and data. Having explored different alternatives, we build up our own comprehensive knowledge repository for plant metabolic networks. A public website (http://www.metnetonline.org) was built to make information available for ad-hoc users. In addition, a dedicated API (MetNetAPI: http://www.metnetonline.org/api) is provided to accommodate bioinformaticians and software developers who wish to build advanced applications on top of the warehouse. Integrated databases are only useful when they can be synchronized with their respective external sources. We’ve created a framework for a systematic approach to integration. This work thus provides a roadmap to current and future biological database projects

Biographie de l'auteur

Dr. Sucaet holds a Ph.D. in bioinformatics from Iowa State University. Hisresearch background is in systems and network biology. He is a co-founder of Pathomation and currently fulfills the role of Chief Technology Officer.Before that, he was at HistoGeneX in the function of Section Head, DataManagement & Bioinformatics.

Les informations fournies dans la section « A propos du livre » peuvent faire référence à une autre édition de ce titre.

Éditeur
LAP LAMBERT Academic Publishing
Date d'édition
2014
Langue
anglais
ISBN 10 
3659524603
ISBN 13 
9783659524608
Reliure
Broché
Nombre de pages
112
Coordonnées du fabricant
non disponible
Personne responsable
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