Evolutionary Analysis of Plants Using Chloroplast Proteome Sequences: Method to detect unbiased conservation between genomes - Couverture souple

Shanker, Asheesh; SHARMA, VINAY

 
9783847375630: Evolutionary Analysis of Plants Using Chloroplast Proteome Sequences: Method to detect unbiased conservation between genomes
Couverture souple
ISBN 10 : 3847375636 ISBN 13 : 9783847375630
Editeur : LAP LAMBERT Academic Publishing, 2012

Synopsis

As more chloroplast genomes are sequenced their comparative analysis helps to identify conservedness between genomes and provide evidence on the evolutionary history of organisms. In order to increase the significance of similarity search, we defined three new parameters; Cumulative Sum of Homologs (CSH), Actual Proportion of Homologs (APH) and Homology Impact (HI) for post BLAST analysis. These parameters can also be used in other similarity search tools and are useful to identify unbiased conservation between genomes. Moreover, our work demonstrates use of missing data in phylogenetic analysis. The trees obtained from incomplete data sets have higher levels of bootstrap support for most of the nodes in comparison to the tree from complete data set. Further, comparative analysis of chloroplast proteomes identified hornworts as the transition link between bryophytes and pteridophytes.

Les informations fournies dans la section « Synopsis » peuvent faire référence à une autre édition de ce titre.

Présentation de l'éditeur

As more chloroplast genomes are sequenced their comparative analysis helps to identify conservedness between genomes and provide evidence on the evolutionary history of organisms. In order to increase the significance of similarity search, we defined three new parameters; Cumulative Sum of Homologs (CSH), Actual Proportion of Homologs (APH) and Homology Impact (HI) for post BLAST analysis. These parameters can also be used in other similarity search tools and are useful to identify unbiased conservation between genomes. Moreover, our work demonstrates use of missing data in phylogenetic analysis. The trees obtained from incomplete data sets have higher levels of bootstrap support for most of the nodes in comparison to the tree from complete data set. Further, comparative analysis of chloroplast proteomes identified hornworts as the transition link between bryophytes and pteridophytes.

Biographie de l'auteur

Dr. Asheesh Shanker is actively involved in bioinformatics teaching and research at Dept. of Bioscience and Biotechnology, Banasthali University, India. Earlier he co-authored text book of bioinformatics with Prof. Sharma. Prof. Vinay Sharma, Dean & Chair of the same department has contributed through his decades of teaching and research expertise.

Les informations fournies dans la section « A propos du livre » peuvent faire référence à une autre édition de ce titre.

Éditeur
LAP LAMBERT Academic Publishing
Date d'édition
2012
Langue
anglais
ISBN 10 
3847375636
ISBN 13 
9783847375630
Reliure
Broché
Nombre de pages
168
Coordonnées du fabricant
non disponible
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