Part I: Introduction
  
 1. Modified Forms of Cytosine in Eukaryotes: DNA (De)Methylation and Beyond
  Maria Eleftheriou and Alexey Ruzov
  
 2. Evidence for Non-Cytosine Epigenetic DNA Modifications in Multicellular Eukaryotes: An Overview
  Paige Lowe, Ryszard Olinski, and Alexey Ruzov
  
 3. Mass Spectrometry-Based Analysis of DNA Modifications: Potential Applications in Basic Research and Clinic
  Ryszard Olinski, Rafal Rozalski, and Daniel Gackowski
  
 4. Mapping DNA Methylation in Mammals: The State of the Art
  Antonio Lentini and Colm E. Nestor
  
 Part II: Detection and Quantification of DNA Modifications Using Mass Spectrometry and Capillary Gel Electrophoresis
  
 5. Detection of Modified Bases in Bacteriophage Genomic DNA
  Yan-Jiun Lee and Peter R. Weigele
  
 6. Liquid Chromatography-Mass Spectrometry Analysis of Cytosine Modifications
  Nan Dai and Ivan R. Corrêa Jr.
  
 7. Detection of DNA Methylation in Genomic DNA by UHPLC-MS/MS
  Konstantinos Boulias and Eric Lieberman Greer
  
 8. Quantification of DNA Modifications Using Two-Dimensional Ultra-Performance Liquid Chromatography Tandem Mass-Spectrometry (2D-UPLC-MS/MS)
  Marta Starczak, Maciej Gawronski, Ryszard Olinski, and Daniel Gackowski
  
 9. MS Analysis of DNA Modifications in Urinary/Body Fluids
 Aleksandra Skalska, Agnieszka Siomek-Gorecka, Ryszard Olinski, and Rafal Rozalski
  
 10. Preparation of Internal Standards for 2D-UPLC-MS/MS Quantification of Non-Canonical DNA Bases
  Marta Starczak, Aleksandra Skalska, Rafal Rozalski, Ryszard Olinski, and Daniel Gackowski
  11. Detection of TET-Oxidized 5-Methylcytosine Bases by Capillary Gel Electrophoresis
  Romualdas Vaisvila, Lise Hunault, and Lana Saleh
  
 Part III: Assessing the Levels and Spatial Distribution of DNA Modifications Using Antibody-Based Approaches
  
 12. Immunochemical Detection of Modified Cytosine Species in Mammalian Preimplantation Embryos
  Tie-Bo Zeng and Piroska E. Szabó
  
 13. Immunochemical Detection of Modified Cytosine Species in Lampbrush Chromatin
 Garry T. Morgan
  
 14. Detection of Low-Abundance DNA Modifications Using Signal Amplification-Based Immunocytochemistry
  Abdulkadir Abakir and Alexey Ruzov
  
 15. Immunohistochemical Detection of Modified Cytosine Bases in Rodent Brain
  Marcus D. Wallis and Rebecca C. Trueman
  
 16. Immunohistochemical Detection of 5-Hydroxymethylcytosine and 5-Ca