Preface...
Table of Contents...
Contributing Authors...
Part I Fundamentals of Protein Bioinformatics
1. Protein Bioinformatics Databases and Resources
Chuming Chen, Hongzhan Huang, and Cathy H. Wu
2. UniProt Protein Knowledgebase
Sangya Pundir, Maria J. Martin, and Claire O'Donovan
3. Tutorial on Protein Ontology Resources
Cecilia N. Arighi, Harold Drabkin, Karen R. Christie, Karen E. Ross, and Darren Natale
4. CATH-Gene3D: Generation of the Resource and its Use in Obtaining Structural and Functional Annotations for Protein Sequences
Natalie L. Dawson, Ian Sillitoe, Jonathan G. Lees, Su Datt Lam, and Christine A. Orengo
5. Structure-Based Virtual Screening
Qingliang Li and Salim Shah
Part II Protein PTM (Post-Translational Modification) Bioinformatics
6. Bioinformatics Analysis of Protein Phosphorylation in Plant Systems Biology Using P3DB
Qiuming Yao and Dong Xu
7. Navigating the Glycome Space and Connecting the Glycoproteome
Matthew P. Campbell, Robyn A. Peterson, Elisabeth Gasteiger, Julien Mariethoz, Frederique Lisacek, and Nicolle H. Packer
8. Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins
Naila Gulzar, Hayley Dingerdissen, Cheng Yan, and Raja Mazumder