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Analyzing Flow Cytometry Data Using KNIME Workflows: A report of an internship at Janssen Pharmaceutica - Couverture souple

Borgers, Toon

 
9783659166235: Analyzing Flow Cytometry Data Using KNIME Workflows: A report of an internship at Janssen Pharmaceutica
Couverture souple
ISBN 10 : 3659166235 ISBN 13 : 9783659166235
Editeur : LAP LAMBERT Academic Publishing, 2012

Synopsis

This document is an extensive report of an internship at Janssen Pharmaceutica. Scientists at Janssen Pharmaceutica perform routine experiments on large amounts of cells using a technique that irradiates cells with laser light called Flow Cytometry. The goal of the internship project was to automate the data analysis of many of these routine experiments. The existing Flow Cytometry machine is able to process the cells and save all its data into files. These files are used as input for the application. Essentially, we created nodes. Nodes are modular units with a very specific task in mind. For instance, it is possible to have a node which handles the conversion of data into a table. These different nodes can be connected to create complex structures. These complex structures, called workflows, aid in the analysis performed on the data. The final goal would be to fully integrate our project with the existing research platform. The internship project used the KNIME tool. KNIME is an easy to use program which contains all the nodes and allows them to be connected. The nodes themselves are programmed in Java 1.6, making use of the KNIME Framework.

Les informations fournies dans la section « Synopsis » peuvent faire référence à une autre édition de ce titre.

Présentation de l'éditeur

This document is an extensive report of an internship at Janssen Pharmaceutica. Scientists at Janssen Pharmaceutica perform routine experiments on large amounts of cells using a technique that irradiates cells with laser light called Flow Cytometry. The goal of the internship project was to automate the data analysis of many of these routine experiments. The existing Flow Cytometry machine is able to process the cells and save all its data into files. These files are used as input for the application. Essentially, we created nodes. Nodes are modular units with a very specific task in mind. For instance, it is possible to have a node which handles the conversion of data into a table. These different nodes can be connected to create complex structures. These complex structures, called workflows, aid in the analysis performed on the data. The final goal would be to fully integrate our project with the existing research platform. The internship project used the KNIME tool. KNIME is an easy to use program which contains all the nodes and allows them to be connected. The nodes themselves are programmed in Java 1.6, making use of the KNIME Framework.

Biographie de l'auteur

Toon Borgers, Bachelor Applied Informatics: Studied applied informatics at Katholieke Hogeschool Kempen, specializing in Software Development and Systems and Network Management. Agile software developer at Cegeka, Haasrode, Belgium.

Les informations fournies dans la section « A propos du livre » peuvent faire référence à une autre édition de ce titre.

Éditeur
LAP LAMBERT Academic Publishing
Date d'édition
2012
Langue
anglais
ISBN 10 
3659166235
ISBN 13 
9783659166235
Reliure
Broché
Nombre de pages
120
Coordonnées du fabricant
non disponible
Personne responsable
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